HL_6SWA_001
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 6SWA|1|q|A|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SWA_001 not in the Motif Atlas
- Geometric match to HL_361D_002
- Geometric discrepancy: 0.2377
- The information below is about HL_361D_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SWA|1|q|U|37
6SWA|1|q|A|38
6SWA|1|q|A|39
6SWA|1|q|G|40
6SWA|1|q|C|41
6SWA|1|q|A|42
6SWA|1|q|U|43
6SWA|1|q|A|44
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain K
- 60S ribosomal protein L13
- Chain M
- 60S ribosomal protein L15
- Chain Y
- 60S ribosomal protein L27a
- Chain m
- MCG115063, isoform CRA_a
Coloring options: