HL_6SWA_005

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCUGAUCG

Length

10 nucleotides

Bulged bases

6SWA|1|q|U|206

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_005 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2024

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6SWA|1|q|C|199
6SWA|1|q|U|200
6SWA|1|q|U|201
6SWA|1|q|C|202
6SWA|1|q|U|203
6SWA|1|q|G|204
6SWA|1|q|A|205
6SWA|1|q|U|206
6SWA|1|q|C|207
6SWA|1|q|G|208

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain C

60S ribosomal protein L4

Chain W

60S ribosomal protein L26

Chain c

60S ribosomal protein L32