HL_6SWA_008
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 6SWA|1|q|G|309, 6SWA|1|q|U|310
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SWA_008 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.1221
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6SWA|1|q|G|308
6SWA|1|q|G|309
6SWA|1|q|U|310
6SWA|1|q|A|311
6SWA|1|q|A|312
6SWA|1|q|A|313
6SWA|1|q|C|314
6SWA|1|q|U|315
6SWA|1|q|C|316
6SWA|1|q|C|317
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain M
- 60S ribosomal protein L15
- Chain Y
- 60S ribosomal protein L27a
- Chain g
- 60S ribosomal protein L36
- Chain m
- MCG115063, isoform CRA_a
Coloring options: