HL_6SWA_020

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCCUCUCCAGUCCGC

Length

16 nucleotides

Bulged bases

6SWA|1|q|U|1421, 6SWA|1|q|C|1422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_020 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.3275

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6SWA|1|q|G|1417
6SWA|1|q|G|1418
6SWA|1|q|C|1419
6SWA|1|q|C|1420
6SWA|1|q|U|1421
6SWA|1|q|C|1422
6SWA|1|q|U|1423
6SWA|1|q|C|1424
6SWA|1|q|C|1425
6SWA|1|q|A|1426
6SWA|1|q|G|1427
6SWA|1|q|U|1428
6SWA|1|q|C|1429
6SWA|1|q|C|1430
6SWA|1|q|G|1431
6SWA|1|q|C|1432

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain C

60S ribosomal protein L4

Chain F

60S ribosomal protein L7

Chain P

60S ribosomal protein L18