HL_6SWA_026

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

6SWA|1|q|C|1750

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_026 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.5677

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SWA|1|q|C|1745
6SWA|1|q|G|1746
6SWA|1|q|A|1747
6SWA|1|q|A|1748
6SWA|1|q|A|1749
6SWA|1|q|C|1750
6SWA|1|q|G|1751

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain J

60S ribosomal protein L11