HL_6SWA_032
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCCUACGC
- Length
- 9 nucleotides
- Bulged bases
- 6SWA|1|q|U|2246, 6SWA|1|q|C|2248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SWA_032 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3839
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SWA|1|q|G|2066
6SWA|1|q|G|2067
6SWA|1|q|C|2068
6SWA|1|q|C|2245
6SWA|1|q|U|2246
6SWA|1|q|A|2247
6SWA|1|q|C|2248
6SWA|1|q|G|2249
6SWA|1|q|C|2250
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain P
- 60S ribosomal protein L18
- Chain c
- 60S ribosomal protein L32
- Chain p
- 60S ribosomal protein L28
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