HL_6SWA_038

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6SWA|1|q|U|2509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_038 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1928

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6SWA|1|q|G|2502
6SWA|1|q|U|2503
6SWA|1|q|U|2504
6SWA|1|q|C|2505
6SWA|1|q|A|2506
6SWA|1|q|G|2507
6SWA|1|q|A|2508
6SWA|1|q|U|2509
6SWA|1|q|C|2510
6SWA|1|q|C|2511

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain V

60S ribosomal protein L23a

Chain e

60S ribosomal protein L34

Chain o

60S ribosomal protein L19

Chain t

Proliferation-associated protein 2G4