HL_6SWA_039

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_039 not in the Motif Atlas

Geometric match to HL_4Y1M_002

Geometric discrepancy: 0.1357

The information below is about HL_4Y1M_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6SWA|1|q|C|2540
6SWA|1|q|G|2541
6SWA|1|q|C|2542
6SWA|1|q|G|2543
6SWA|1|q|A|2544
6SWA|1|q|G|2545

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains