HL_6SWA_040

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_040 not in the Motif Atlas

Homologous match to HL_8C3A_036

Geometric discrepancy: 0.1387

The information below is about HL_8C3A_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SWA|1|q|G|2557
6SWA|1|q|G|2558
6SWA|1|q|U|2559
6SWA|1|q|A|2560
6SWA|1|q|A|2561
6SWA|1|q|C|2562

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain X

60S ribosomal protein L27

Chain e

60S ribosomal protein L34