HL_6SWA_041

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

6SWA|1|q|U|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_041 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1809

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6SWA|1|q|G|2603
6SWA|1|q|U|2604
6SWA|1|q|U|2605
6SWA|1|q|C|2606
6SWA|1|q|U|2607
6SWA|1|q|C|2608
6SWA|1|q|U|2609
6SWA|1|q|U|2610
6SWA|1|q|U|2611

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain S

60S ribosomal protein L22

Chain o

60S ribosomal protein L19