HL_6SWA_043

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

6SWA|1|q|U|2687, 6SWA|1|q|U|2688

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_043 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1982

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6SWA|1|q|C|2683
6SWA|1|q|A|2684
6SWA|1|q|C|2685
6SWA|1|q|C|2686
6SWA|1|q|U|2687
6SWA|1|q|U|2688
6SWA|1|q|U|2689
6SWA|1|q|G|2690

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain o

60S ribosomal protein L19

Chain t

Proliferation-associated protein 2G4