HL_6SWA_055

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGG

Length

5 nucleotides

Bulged bases

6SWA|1|q|A|4074, 6SWA|1|q|G|4075

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_055 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2736

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6SWA|1|q|C|4072
6SWA|1|q|G|4073
6SWA|1|q|A|4074
6SWA|1|q|G|4075
6SWA|1|q|G|4076

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains