HL_6SWA_057

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6SWA|1|q|G|4157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_057 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1361

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6SWA|1|q|C|4155
6SWA|1|q|U|4156
6SWA|1|q|G|4157
6SWA|1|q|G|4158
6SWA|1|q|G|4159
6SWA|1|q|G|4160
6SWA|1|q|C|4161
6SWA|1|q|G|4162
6SWA|1|q|G|4163

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain I

60S ribosomal protein L10

Chain Z

60S ribosomal protein L29