HL_6SWA_060
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SWA_060 not in the Motif Atlas
- Homologous match to HL_8C3A_058
- Geometric discrepancy: 0.1388
- The information below is about HL_8C3A_058
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
6SWA|1|q|C|4232
6SWA|1|q|A|4233
6SWA|1|q|G|4234
6SWA|1|q|A|4235
6SWA|1|q|A|4236
6SWA|1|q|G|4237
6SWA|1|q|G|4238
6SWA|1|q|G|4239
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain R
- 60S ribosomal protein L21
- Chain m
- MCG115063, isoform CRA_a
Coloring options: