HL_6SWA_068

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_068 not in the Motif Atlas

Geometric match to HL_3E5C_001

Geometric discrepancy: 0.0942

The information below is about HL_3E5C_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6SWA|1|q|C|4565
6SWA|1|q|G|4566
6SWA|1|q|A|4567
6SWA|1|q|G|4568
6SWA|1|q|A|4569
6SWA|1|q|G|4570

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain H

60S ribosomal protein L9

Chain k

Ubiquitin-60S ribosomal protein L40