HL_6SWA_070

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6SWA|1|q|G|4656, 6SWA|1|q|C|4660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SWA_070 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.095

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6SWA|1|q|C|4650
6SWA|1|q|U|4651
6SWA|1|q|G|4652
6SWA|1|q|A|4653
6SWA|1|q|A|4654
6SWA|1|q|C|4655
6SWA|1|q|G|4656
6SWA|1|q|C|4657
6SWA|1|q|C|4658
6SWA|1|q|U|4659
6SWA|1|q|C|4660
6SWA|1|q|U|4661
6SWA|1|q|A|4662
6SWA|1|q|A|4663
6SWA|1|q|G|4664

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain H

60S ribosomal protein L9

Chain N

60S ribosomal protein L13a

Chain k

Ubiquitin-60S ribosomal protein L40