HL_6SWA_082
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SWA_082 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.2295
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6SWA|1|q|A|2355
6SWA|1|q|C|2356
6SWA|1|q|G|2357
6SWA|1|q|A|2358
6SWA|1|q|G|2359
6SWA|1|q|A|2360
6SWA|1|q|A|2361
6SWA|1|q|C|2362
6SWA|1|q|U|2363
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain O
- 60S ribosomal protein L17
- Chain b
- 60S ribosomal protein L31
- Chain o
- 60S ribosomal protein L19
Coloring options: