HL_6SWA_083
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGUUCUCUUUU
- Length
- 11 nucleotides
- Bulged bases
- 6SWA|1|q|U|2610
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SWA_083 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.3833
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SWA|1|q|A|2602
6SWA|1|q|G|2603
6SWA|1|q|U|2604
6SWA|1|q|U|2605
6SWA|1|q|C|2606
6SWA|1|q|U|2607
6SWA|1|q|C|2608
6SWA|1|q|U|2609
6SWA|1|q|U|2610
6SWA|1|q|U|2611
6SWA|1|q|U|2612
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain S
- 60S ribosomal protein L22
- Chain o
- 60S ribosomal protein L19
Coloring options: