HL_6SY4_001

3D structure

PDB id

6SY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

TetR in complex with the TetR-binding RNA-aptamer K1

Experimental method

X-RAY DIFFRACTION

Resolution

2.69 Å

Loop

Sequence

CGAG

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SY4_001 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.2843

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6SY4|1|C|C|21
6SY4|1|C|G|22
6SY4|1|C|A|25
6SY4|1|C|G|26

Current chains

Chain C

TetR-binding aptamer K1 (43-MER)

Nearby chains

Chain A

Tetracycline repressor protein class B from transposon Tn10