3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
GGACCAUC
Length
8 nucleotides
Bulged bases
6SZS|1|A|G|411
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SZS_013 not in the Motif Atlas
Homologous match to HL_5J7L_146
Geometric discrepancy: 0.0807
The information below is about HL_5J7L_146
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_30680.3
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
15

Unit IDs

6SZS|1|A|G|410
6SZS|1|A|G|411
6SZS|1|A|A|412
6SZS|1|A|C|413
6SZS|1|A|C|414
6SZS|1|A|A|415
6SZS|1|A|U|416
6SZS|1|A|C|417

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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