3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
6SZS|1|A|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SZS_017 not in the Motif Atlas
Homologous match to HL_5J7L_150
Geometric discrepancy: 0.0789
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

6SZS|1|A|U|566
6SZS|1|A|U|567
6SZS|1|A|U|568
6SZS|1|A|U|569
6SZS|1|A|G|570
6SZS|1|A|U|571
6SZS|1|A|A|572
6SZS|1|A|U|573
6SZS|1|A|A|574
6SZS|1|A|A|575

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain L
50S ribosomal protein L15
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21

Coloring options:


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