3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
GGUAAGUUC
Length
9 nucleotides
Bulged bases
6SZS|1|A|U|1955
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SZS_049 not in the Motif Atlas
Homologous match to HL_7RQB_049
Geometric discrepancy: 0.0885
The information below is about HL_7RQB_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_51824.1
Basepair signature
cWW-F-F-tSH-F-F
Number of instances in this motif group
8

Unit IDs

6SZS|1|A|G|1949
6SZS|1|A|G|1950
6SZS|1|A|U|1951
6SZS|1|A|A|1952
6SZS|1|A|A|1953
6SZS|1|A|G|1954
6SZS|1|A|U|1955
6SZS|1|A|U|1956
6SZS|1|A|C|1957

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L14
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain z
Peptide chain release factor 2

Coloring options:


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