3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
GGUCGGACAUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SZS_055 not in the Motif Atlas
Homologous match to HL_7RQB_055
Geometric discrepancy: 0.1369
The information below is about HL_7RQB_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_11805.3
Basepair signature
cWW-F-F-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

6SZS|1|A|G|2303
6SZS|1|A|G|2304
6SZS|1|A|U|2305
6SZS|1|A|C|2306
6SZS|1|A|G|2307
6SZS|1|A|G|2308
6SZS|1|A|A|2309
6SZS|1|A|C|2310
6SZS|1|A|A|2311
6SZS|1|A|U|2312
6SZS|1|A|C|2313

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain F
50S ribosomal protein L5

Coloring options:


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