3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
CUACGG
Length
6 nucleotides
Bulged bases
6SZS|1|a|A|344
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SZS_080 not in the Motif Atlas
Homologous match to HL_5J7L_009
Geometric discrepancy: 0.1003
The information below is about HL_5J7L_009
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

6SZS|1|a|C|342
6SZS|1|a|U|343
6SZS|1|a|A|344
6SZS|1|a|C|345
6SZS|1|a|G|346
6SZS|1|a|G|347

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19

Coloring options:


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