HL_6SZS_083

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6SZS|1|a|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SZS_083 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1809

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6SZS|1|a|G|462
6SZS|1|a|U|463
6SZS|1|a|U|464
6SZS|1|a|A|465
6SZS|1|a|A|466
6SZS|1|a|U|467
6SZS|1|a|A|468
6SZS|1|a|C|469
6SZS|1|a|C|470

Current chains

Chain a

16S ribosomal RNA

Nearby chains