3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
UGAUAAA
Length
7 nucleotides
Bulged bases
6SZS|1|a|U|1168
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SZS_097 not in the Motif Atlas
Homologous match to HL_4LFB_027
Geometric discrepancy: 0.3325
The information below is about HL_4LFB_027
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

6SZS|1|a|U|1165
6SZS|1|a|G|1166
6SZS|1|a|A|1167
6SZS|1|a|U|1168
6SZS|1|a|A|1169
6SZS|1|a|A|1170
6SZS|1|a|A|1171

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain u
30S ribosomal protein S21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3896 s