HL_6T3R_006

3D structure

PDB id

6T3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of K+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.57 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T3R_006 not in the Motif Atlas

Geometric match to HL_5FJC_003

Geometric discrepancy: 0.1076

The information below is about HL_5FJC_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6T3R|1|A|G|274
6T3R|1|A|G|275
6T3R|1|A|A|276
6T3R|1|A|A|277
6T3R|1|A|A|278
6T3R|1|A|C|279

Current chains

Chain A

Group IIC Intron Ribozyme

Nearby chains