HL_6T4Q_002

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAAUGGUCACG

Length

12 nucleotides

Bulged bases

6T4Q|1|6|U|16, 6T4Q|1|6|G|17, 6T4Q|1|6|G|18, 6T4Q|1|6|U|19, 6T4Q|1|6|C|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_002 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.3703

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

6T4Q|1|6|C|12
6T4Q|1|6|C|13
6T4Q|1|6|A|14
6T4Q|1|6|A|15
6T4Q|1|6|U|16
6T4Q|1|6|G|17
6T4Q|1|6|G|18
6T4Q|1|6|U|19
6T4Q|1|6|C|20
6T4Q|1|6|A|21
6T4Q|1|6|C|22
6T4Q|1|6|G|23

Current chains

Chain 6

ICG tRNA Arg (P/P)

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

60S ribosomal protein L11-B

Chain Lo

60S ribosomal protein L42-A