HL_6T4Q_003
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCUICGAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6T4Q_003 not in the Motif Atlas
- Homologous match to HL_9DFC_104
- Geometric discrepancy: 0.114
- The information below is about HL_9DFC_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6T4Q|1|6|G|31
6T4Q|1|6|C|32
6T4Q|1|6|U|33
6T4Q|1|6|I|34
6T4Q|1|6|C|35
6T4Q|1|6|G|36
6T4Q|1|6|A|37
6T4Q|1|6|A|38
6T4Q|1|6|C|39
Current chains
- Chain 6
- ICG tRNA Arg (P/P)
Nearby chains
- Chain 5
- mRNA
- Chain 7
- Transfer RNA; tRNA
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SQ
- 40S ribosomal protein S16-A
Coloring options: