HL_6T4Q_005
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUAACGGCUAUC
- Length
- 12 nucleotides
- Bulged bases
- 6T4Q|1|7|C|16, 6T4Q|1|7|G|17, 6T4Q|1|7|G|18, 6T4Q|1|7|C|19, 6T4Q|1|7|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6T4Q_005 not in the Motif Atlas
- Homologous match to HL_1SER_001
- Geometric discrepancy: 0.3563
- The information below is about HL_1SER_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40252.3
- Basepair signature
- cWW-tSH-cWS-F
- Number of instances in this motif group
- 5
Unit IDs
6T4Q|1|7|G|12
6T4Q|1|7|U|13
6T4Q|1|7|A|14
6T4Q|1|7|A|15
6T4Q|1|7|C|16
6T4Q|1|7|G|17
6T4Q|1|7|G|18
6T4Q|1|7|C|19
6T4Q|1|7|U|20
6T4Q|1|7|A|21
6T4Q|1|7|U|22
6T4Q|1|7|C|23
Current chains
- Chain 7
- tRNA (E/E)
Nearby chains
- Chain SB
- 40S ribosomal protein S1-A
Coloring options: