3D structure

PDB id
6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GUAACGGCUAUC
Length
12 nucleotides
Bulged bases
6T4Q|1|7|C|16, 6T4Q|1|7|G|17, 6T4Q|1|7|G|18, 6T4Q|1|7|C|19, 6T4Q|1|7|U|20
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6T4Q_005 not in the Motif Atlas
Homologous match to HL_1SER_001
Geometric discrepancy: 0.3563
The information below is about HL_1SER_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_40252.3
Basepair signature
cWW-tSH-cWS-F
Number of instances in this motif group
5

Unit IDs

6T4Q|1|7|G|12
6T4Q|1|7|U|13
6T4Q|1|7|A|14
6T4Q|1|7|A|15
6T4Q|1|7|C|16
6T4Q|1|7|G|17
6T4Q|1|7|G|18
6T4Q|1|7|C|19
6T4Q|1|7|U|20
6T4Q|1|7|A|21
6T4Q|1|7|U|22
6T4Q|1|7|C|23

Current chains

Chain 7
tRNA (E/E)

Nearby chains

Chain SB
40S ribosomal protein S1-A

Coloring options:


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