HL_6T4Q_041
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAGCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6T4Q_041 not in the Motif Atlas
- Homologous match to HL_8C3A_033
- Geometric discrepancy: 0.053
- The information below is about HL_8C3A_033
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6T4Q|1|C1|G|1544
6T4Q|1|C1|A|1545
6T4Q|1|C1|A|1546
6T4Q|1|C1|G|1547
6T4Q|1|C1|C|1548
6T4Q|1|C1|U|1549
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LN
- 60S ribosomal protein L15-A
- Chain Lj
- 60S ribosomal protein L37-A
Coloring options: