HL_6T4Q_094

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_094 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1123

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6T4Q|1|C2|A|520
6T4Q|1|C2|A|521
6T4Q|1|C2|U|522
6T4Q|1|C2|G|523
6T4Q|1|C2|U|524
6T4Q|1|C2|A|525
6T4Q|1|C2|A|526
6T4Q|1|C2|A|527
6T4Q|1|C2|U|528
6T4Q|1|C2|A|529
6T4Q|1|C2|C|530
6T4Q|1|C2|C|531
6T4Q|1|C2|U|532

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S24-A