HL_6T4Q_096

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGGCCGGUCGGAUUUCCA

Length

18 nucleotides

Bulged bases

6T4Q|1|C2|C|658, 6T4Q|1|C2|G|676

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T4Q|1|C2|U|650
6T4Q|1|C2|G|651
6T4Q|1|C2|G|652
6T4Q|1|C2|C|653
6T4Q|1|C2|C|654
6T4Q|1|C2|G|655
6T4Q|1|C2|G|656
6T4Q|1|C2|U|657
6T4Q|1|C2|C|658
6T4Q|1|C2|G|676
6T4Q|1|C2|G|677
6T4Q|1|C2|A|678
6T4Q|1|C2|U|679
6T4Q|1|C2|U|680
6T4Q|1|C2|U|681
6T4Q|1|C2|C|682
6T4Q|1|C2|C|683
6T4Q|1|C2|A|684

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A