HL_6T4Q_097

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

6T4Q|1|C2|C|709, 6T4Q|1|C2|U|711, 6T4Q|1|C2|G|712, 6T4Q|1|C2|A|713, 6T4Q|1|C2|G|714, 6T4Q|1|C2|C|726, 6T4Q|1|C2|G|732, 6T4Q|1|C2|A|733

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_097 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2718

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6T4Q|1|C2|G|703
6T4Q|1|C2|C|704
6T4Q|1|C2|U|705
6T4Q|1|C2|A|706
6T4Q|1|C2|A|707
6T4Q|1|C2|C|708
6T4Q|1|C2|C|709
6T4Q|1|C2|U|710
6T4Q|1|C2|U|711
6T4Q|1|C2|G|712
6T4Q|1|C2|A|713
6T4Q|1|C2|G|714
6T4Q|1|C2|C|726
6T4Q|1|C2|U|727
6T4Q|1|C2|U|728
6T4Q|1|C2|G|729
6T4Q|1|C2|G|730
6T4Q|1|C2|C|731
6T4Q|1|C2|G|732
6T4Q|1|C2|A|733
6T4Q|1|C2|A|734
6T4Q|1|C2|C|735

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A