HL_6T4Q_098

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6T4Q|1|C2|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_098 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1018

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6T4Q|1|C2|U|764
6T4Q|1|C2|G|765
6T4Q|1|C2|U|766
6T4Q|1|C2|U|767
6T4Q|1|C2|C|768
6T4Q|1|C2|A|769
6T4Q|1|C2|A|770
6T4Q|1|C2|A|771
6T4Q|1|C2|G|772

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S24-A