HL_6T4Q_106

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_106 not in the Motif Atlas

Homologous match to HL_4V88_211

Geometric discrepancy: 0.0864

The information below is about HL_4V88_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T4Q|1|C2|C|1121
6T4Q|1|C2|G|1122
6T4Q|1|C2|C|1123
6T4Q|1|C2|A|1124
6T4Q|1|C2|A|1125
6T4Q|1|C2|G|1126

Current chains

Chain C2

18S rRNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41-A

Chain Lp

60S ribosomal protein L43-A