HL_6T4Q_112

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_112 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3995

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6T4Q|1|C2|U|1396
6T4Q|1|C2|U|1397
6T4Q|1|C2|U|1398
6T4Q|1|C2|C|1399
6T4Q|1|C2|A|1400
6T4Q|1|C2|A|1401
6T4Q|1|C2|G|1402

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17-A