HL_6T4Q_116

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAUCGGGGCAACUCCAU*C

Length

18 nucleotides

Bulged bases

6T4Q|1|C2|G|1696, 6T4Q|1|C2|G|1697, 6T4Q|1|C2|G|1698, 6T4Q|1|C2|G|1699, 6T4Q|1|C2|C|1700, 6T4Q|1|C2|A|1701, 6T4Q|1|C2|A|1702, 6T4Q|1|C2|C|1703, 6T4Q|1|C2|U|1704, 6T4Q|1|C2|C|1705, 6T4Q|1|C2|C|1706, 6T4Q|1|C2|A|1707

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T4Q_116 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2182

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6T4Q|1|C2|G|1692
6T4Q|1|C2|A|1693
6T4Q|1|C2|U|1708
6T4Q|1|C2|C|1709
6T4Q|1|C2|G|1696
6T4Q|1|C2|G|1697
6T4Q|1|C2|G|1698
6T4Q|1|C2|G|1699
6T4Q|1|C2|C|1700
6T4Q|1|C2|A|1701
6T4Q|1|C2|A|1702
6T4Q|1|C2|C|1703
6T4Q|1|C2|U|1704
6T4Q|1|C2|C|1705
6T4Q|1|C2|C|1706
6T4Q|1|C2|A|1707
6T4Q|1|C2|U|1708
*
6T4Q|1|C2|C|1709

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-A