HL_6T7I_005
3D structure
- PDB id
- 6T7I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCUUUCACC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6T7I_005 not in the Motif Atlas
- Homologous match to HL_1U0B_002
- Geometric discrepancy: 0.2508
- The information below is about HL_1U0B_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
6T7I|1|7|G|31
6T7I|1|7|C|32
6T7I|1|7|U|33
6T7I|1|7|U|34
6T7I|1|7|U|35
6T7I|1|7|C|36
6T7I|1|7|A|37
6T7I|1|7|C|38
6T7I|1|7|C|39
Current chains
- Chain 7
- tRNA (E-site)
Nearby chains
- Chain 5
- mRNA
- Chain 6
- Transfer RNA; tRNA
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SB
- 40S ribosomal protein S1-A
- Chain SF
- Rps5p
- Chain SO
- 40S ribosomal protein S14-A
- Chain Sc
- 40S ribosomal protein S28-B
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