HL_6T7I_006

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUCGACUC

Length

9 nucleotides

Bulged bases

6T7I|1|7|C|55, 6T7I|1|7|G|56

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_006 not in the Motif Atlas

Homologous match to HL_2BTE_004

Geometric discrepancy: 0.3379

The information below is about HL_2BTE_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6T7I|1|7|G|52
6T7I|1|7|U|53
6T7I|1|7|U|54
6T7I|1|7|C|55
6T7I|1|7|G|56
6T7I|1|7|A|57
6T7I|1|7|C|58
6T7I|1|7|U|59
6T7I|1|7|C|60

Current chains

Chain 7

tRNA (E-site)

Nearby chains