HL_6T7I_016

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_016 not in the Motif Atlas

Homologous match to HL_5TBW_010

Geometric discrepancy: 0.098

The information below is about HL_5TBW_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T7I|1|C1|A|357
6T7I|1|C1|G|358
6T7I|1|C1|U|359
6T7I|1|C1|G|360
6T7I|1|C1|A|361
6T7I|1|C1|U|362

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4-A

Chain Lj

60S ribosomal protein L37-A

Chain Ll

60S ribosomal protein L39