HL_6T7I_026

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

6T7I|1|C1|A|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_026 not in the Motif Atlas

Homologous match to HL_9AXU_017

Geometric discrepancy: 0.5481

The information below is about HL_9AXU_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6T7I|1|C1|G|844
6T7I|1|C1|G|845
6T7I|1|C1|A|846
6T7I|1|C1|A|847
6T7I|1|C1|A|848
6T7I|1|C1|C|849

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain SL

40S ribosomal protein S11-A

Chain SN

40S ribosomal protein S13