HL_6T7I_042

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

6T7I|1|C1|U|1606, 6T7I|1|C1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_042 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0945

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6T7I|1|C1|G|1599
6T7I|1|C1|U|1600
6T7I|1|C1|U|1601
6T7I|1|C1|A|1602
6T7I|1|C1|A|1603
6T7I|1|C1|G|1604
6T7I|1|C1|A|1605
6T7I|1|C1|U|1606
6T7I|1|C1|U|1607
6T7I|1|C1|C|1608

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain LX

60S ribosomal protein L25

Chain Lg

60S ribosomal protein L34-A