HL_6T7I_096

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUAACCUUGAGCUUGGCGAAC

Length

22 nucleotides

Bulged bases

6T7I|1|C2|C|709, 6T7I|1|C2|U|711, 6T7I|1|C2|G|714, 6T7I|1|C2|C|726, 6T7I|1|C2|A|733

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_096 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.302

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6T7I|1|C2|G|703
6T7I|1|C2|C|704
6T7I|1|C2|U|705
6T7I|1|C2|A|706
6T7I|1|C2|A|707
6T7I|1|C2|C|708
6T7I|1|C2|C|709
6T7I|1|C2|U|710
6T7I|1|C2|U|711
6T7I|1|C2|G|712
6T7I|1|C2|A|713
6T7I|1|C2|G|714
6T7I|1|C2|C|726
6T7I|1|C2|U|727
6T7I|1|C2|U|728
6T7I|1|C2|G|729
6T7I|1|C2|G|730
6T7I|1|C2|C|731
6T7I|1|C2|G|732
6T7I|1|C2|A|733
6T7I|1|C2|A|734
6T7I|1|C2|C|735

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4-A