HL_6T7I_098

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_098 not in the Motif Atlas

Homologous match to HL_8P9A_207

Geometric discrepancy: 0.3516

The information below is about HL_8P9A_207

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

6T7I|1|C2|C|777
6T7I|1|C2|G|778
6T7I|1|C2|U|779
6T7I|1|C2|A|780
6T7I|1|C2|U|781
6T7I|1|C2|U|782
6T7I|1|C2|G|783

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SY

40S ribosomal protein S24-A