HL_6T7I_101

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7I_101 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.1134

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T7I|1|C2|C|937
6T7I|1|C2|G|938
6T7I|1|C2|A|939
6T7I|1|C2|A|940
6T7I|1|C2|A|941
6T7I|1|C2|G|942

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sa

40S ribosomal protein S26-A