HL_6T7T_011

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

6T7T|1|C1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_011 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1195

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6T7T|1|C1|U|194
6T7T|1|C1|U|195
6T7T|1|C1|G|196
6T7T|1|C1|G|197
6T7T|1|C1|A|198
6T7T|1|C1|A|199
6T7T|1|C1|C|200
6T7T|1|C1|A|201

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-A

Chain LY

60S ribosomal protein L26-A

Chain Le

60S ribosomal protein L32