HL_6T7T_029

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

6T7T|1|C1|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_029 not in the Motif Atlas

Geometric match to HL_5TBW_023

Geometric discrepancy: 0.1787

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6T7T|1|C1|C|1023
6T7T|1|C1|G|1024
6T7T|1|C1|A|1025
6T7T|1|C1|A|1026
6T7T|1|C1|A|1027
6T7T|1|C1|U|1028
6T7T|1|C1|G|1029

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L11-B

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18-A