HL_6T7T_041

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

6T7T|1|C1|U|1606, 6T7T|1|C1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_041 not in the Motif Atlas

Geometric match to HL_5TBW_035

Geometric discrepancy: 0.1138

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6T7T|1|C1|G|1599
6T7T|1|C1|U|1600
6T7T|1|C1|U|1601
6T7T|1|C1|A|1602
6T7T|1|C1|A|1603
6T7T|1|C1|G|1604
6T7T|1|C1|A|1605
6T7T|1|C1|U|1606
6T7T|1|C1|U|1607
6T7T|1|C1|C|1608

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain LX

60S ribosomal protein L25

Chain Lg

60S ribosomal protein L34-A