HL_6T7T_042

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T7T_042 not in the Motif Atlas

Geometric match to HL_2Z75_004

Geometric discrepancy: 0.1233

The information below is about HL_2Z75_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6T7T|1|C1|G|1634
6T7T|1|C1|G|1635
6T7T|1|C1|U|1636
6T7T|1|C1|A|1637
6T7T|1|C1|A|1638
6T7T|1|C1|C|1639

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27-A

Chain Lg

60S ribosomal protein L34-A